CytofDR
Input Parameters
Real/Simulation
Real
Simulation
Tissue/Disease
Breast cancer
Brain
Peripheral blood of COVID-19 vaccinee
Peanut-allergic patients
Bone marrow
Lacrimal glands
Peripheral blood of lung cancer patients
Melanoma
Simulation
Method
DiffMap
PHATE
UMAP
SQuaD-MDS Hybrid
SQuaD-MDS
Spectral
tSNE (sklearn)
scvis
scvis (Full)
SAUCIE
PCA
FA
tSNE
NMF
LLE
KPCA RBF
KPCA Poly
Isomap
ICA
GrandPrix
ZIFA
Category
Linear
Nonlinear
Platform
R
Python
Other
Metrics
Global
Local
Downstream
scRNA Concordance
Stability
Scalability
Usability
Cell Number
<= 10,000
10,001 - 100,000
100,001 - 200,000
200,001 - 300,000
300,001 - 400,000
400,001 - 500,000
> 500,000
Protein Feature Number
<= 30
31 - 35
36 - 40
41 - 50
51 - 60
Search
Dr. Tao Wang Lab
Dr. Xinlei (Sherry) Wang Lab
Database for Actionable Immunology (DBAI)
Show/Hide Columns
Data
Sample
Cell Number
Protein Feature Number
Tissue/Disease
Data
Publication
Cell Typing
Matched scRNA
Evaluation Metrics
(For detailed explanation of the metrics, please refer to Sup. Table 3 of our paper)
Method
Error
Forced Downsample
Category
Purpose
Platform
Package
Documentation
CI/CD
Update
Cross Platform
Matrix
Import
Open Source
CLI
Builtin
Mapping
Robust
Speed
Memory
Simulated Trees
Simulated Cell Types
Rank
Position
Method
Average of Chosen Metrics
Accuracy